Index

A

add_new_spectra() (ms_entropy.DynamicEntropySearch method)

add_new_spectrum_into_index() (ms_entropy.DynamicEntropySearchCore method) apply_weight_to_intensity() (in module ms_entropy)

B

build_index() (ms_entropy.DynamicEntropySearch method) (ms_entropy.DynamicEntropySearchCore method) (ms_entropy.FlashEntropySearch method) (ms_entropy.FlashEntropySearchCore method)

C

calculate_entropy_similarity() (in module ms_entropy) calculate_spectral_entropy() (in module ms_entropy) calculate_unweighted_entropy_similarity() (in module ms_entropy) clean_spectrum() (in module ms_entropy)

clean_spectrum_for_search() (ms_entropy.FlashEntropySearch method) convert_current_index_to_flash() (ms_entropy.DynamicEntropySearch method) convert_to_fast_search() (ms_entropy.DynamicEntropySearch method) (ms_entropy.DynamicEntropySearchCore method)

D

DynamicEntropySearch (class in ms_entropy)

DynamicEntropySearchCore (class in ms_entropy)

F

fast_add_new_spectrum_into_index() (ms_entropy.DynamicEntropySearchCore method) FlashEntropySearch (class in ms_entropy)

FlashEntropySearchCore (class in ms_entropy) FlashEntropySearchCoreLowMemory (class in ms_entropy) FlashEntropySearchCoreMediumMemory (class in ms_entropy)

G

get_metadata() (ms_entropy.DynamicEntropySearch method)

get_topn_matches() (ms_entropy.FlashEntropySearch method) get_topn_spec_idx_and_similarity() (ms_entropy.DynamicEntropySearchCore method)

H

hybrid_search() (ms_entropy.DynamicEntropySearch method) (ms_entropy.FlashEntropySearch method)

I

identity_search() (ms_entropy.DynamicEntropySearch method) (ms_entropy.FlashEntropySearch method)

N

neutral_loss_search() (ms_entropy.DynamicEntropySearch method) (ms_entropy.FlashEntropySearch method)

O

open_search() (ms_entropy.DynamicEntropySearch method) (ms_entropy.FlashEntropySearch method)

R

read() (ms_entropy.DynamicEntropySearch method) (ms_entropy.DynamicEntropySearchCore method) (ms_entropy.FlashEntropySearch method) (ms_entropy.FlashEntropySearchCore method) (ms_entropy.FlashEntropySearchCoreLowMemory method) (ms_entropy.FlashEntropySearchCoreMediumMemory method)

remove_index() (ms_entropy.DynamicEntropySearchCore method)

S

save_memory_for_multiprocessing() (ms_entropy.FlashEntropySearch method) (ms_entropy.FlashEntropySearchCore method) search() (ms_entropy.DynamicEntropySearch method) (ms_entropy.DynamicEntropySearchCore method) (ms_entropy.FlashEntropySearch method) (ms_entropy.FlashEntropySearchCore method)

search_hybrid() (ms_entropy.DynamicEntropySearchCore method) (ms_entropy.FlashEntropySearchCore method) (ms_entropy.FlashEntropySearchCoreLowMemory method) search_topn_matches() (ms_entropy.DynamicEntropySearch method)

W

write() (ms_entropy.DynamicEntropySearch method) (ms_entropy.DynamicEntropySearchCore method) (ms_entropy.FlashEntropySearch method) (ms_entropy.FlashEntropySearchCore method) (ms_entropy.FlashEntropySearchCoreLowMemory method) (ms_entropy.FlashEntropySearchCoreMediumMemory method)